GEMAT: GENOMIC EXPERIMENT MANAGEMENT AND ANALYSIS TOOL Version 1, Released June 2005

• The current version of GEMAT can do the following:
  • Collect data at various stages of a genomics experiment
  • Use Quality control measures in selecting chips
  • Apply various filters on the detection call, average intensity, fold change and p-value for the t-test on a specific dataset
  • Publish comparison analysis results on the web
  • Perform searches on annotation files, result files, etc
  • Perform post-experimental analyses such as clustering of any group of chips under a project (or across projects), Fisher-exact test and other statistical functions by interfacing with R
  • Overlay gene expression data and experiment results on biological pathways.
  • Customize network pathways and extend to describe more about a pathway

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Created and maintained by Bioinformatics Core, Roskamp Institute